#Install tcl package centos install#
Install the alternate package repository Bioconductor to help with prerequisite packages that are missing from CRAN. library(devtools)ĭevtools::install_github('imanuelcostigan/RSQLServer') Load devtools and install RSQLServer 0.3 from GitHub because RSQLServer 0.2 on CRAN is broken. The rest of these commands must be entered into R. Repeat the above steps for the CRAN packages expm and GNE because they have the same problem in locale.h Then re-compress the package and install it. wget Īnd remove some lines so it looks like this: /* Localization */ PKG_CONFIG_PATH=/usr/local/lib/pkgconfig/Įxport PATH=/usr/local/cuda-8.0/bin$ĭownload the actuar package source from the CRAN website and extract it. With this content in it: export CPATH=\$CPATH:/usr/include/openmpi-x86_64
sudo yum install cudaĬreate this file… sudo nano /etc/profile.d/custom.sh Sudo yum install opencl_runtime_16.1.1_圆4_rh_6.4.0.25/rpm/*ĭownload the CUDA repository for Linux x86_64 from /cuda-downloads and follow the instructions to install it, then install CUDA. Sudo ln -s /usr/local/lib/libggobi.so.0 /usr/lib64/libggobi.so.0 sudo echo "/usr/lib64/openmpi/lib" > /etc/ld.so.conf.d/nf sudo env PATH=/usr/local/bin:$PATH R CMD javareconf Sudo ln -s /usr/lib64/libopenblas.so.0 /usr/lib64/R/lib/libRblas.so sudo mv /usr/lib64/R/lib/libRblas.so /usr/lib64/R/lib/libRblas.so_
Replace the included libRblas.so with a better one from OpenBLAS. Sudo yum install wget openblas java-1.8.0-openjdk-devel zlib-devel libicu-devel libpng-devel libcurl-devel libxml2-devel openssl-devel openmpi-devel numpy python-matplotlib netcdf4-python netcdf-devel netcdf python-pandas python-basemap proj-epsg proj-devel gdal-devel monitorix gnuplot ImageMagick librsvg2-devel libsodium-devel libwebp-devel cairo-devel hunspell-devel openssl-devel poppler-cpp-devel protobuf-devel mariadb-devel mysql-devel v8-devel redland-devel cyrus-sasl-devel libtiff-devel tcl-devel tk-devel xauth mesa-libGLU-devel glpk-devel libXt-devel gsl-devel fftw-devel bzip2-devel geos-devel gtk2-devel gtk3-devel libjpeg-turbo-devel jags4-devel bwidget blas-devel lapack-devel mpfr-devel unixODBC-devel libsndfile-devel udunits2-devel postgresql-devel libRmath-devel qt-devel libdb-devel octave-devel hiredis-devel poppler-glib-devel QuantLib-devel boost-devel czmq-devel ImageMagick-c++-devel file-devel opencl-headers -y Sudo yum groupinstall "Development tools" -y
#Install tcl package centos software#
Some R packages require libraries or development packages from the CentOS software repository. Name=Sundry packages for scientific computing (CentOS_7) Use your favourite text editor (I prefer nano) to create this new file… sudo nano /etc//jags.repo That user must be allowed to run commands as root with sudo. Most of this guide must be run from the Linux terminal as the user who will be running R. Some R packages will not install without an active X window session, so if you are not logged in to a graphical interface on the machine you will need to connect via SSH with X-forwarding enabled, such as with PuTTY and VcXsrv on Windows. Why would you want to install every CRAN package? That’s a good question.
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